SRR3559759.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559759.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5071280
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	168616	3.3249199413165904	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	71753	1.4148893376031297	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	50805	1.001818081431118	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28417	0.5603516272025998	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18591	0.36659383824202174	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15096	0.2976763262923759	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12949	0.25533987474562636	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11622	0.2291729109810541	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7463	0.14716205770535248	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6341	0.12503746588632456	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5990	0.11811613636005111	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	58455	65.54248	1
CGCATAG	1065	52.66476	1
TATCAAC	74770	51.23767	2
ATCAACG	76210	50.051422	3
TCAACGC	78075	49.45786	4
TATCACG	895	49.19342	2
CAACGCA	78910	49.05515	5
AACGCAG	80630	48.73924	6
GGTATCA	26460	44.60446	1
ACGCAGA	89535	43.911655	7
CGCAGAG	90580	43.42647	8
GCAGAGT	94390	41.629463	9
TACAACG	960	39.0452	2
TCACGCA	1125	38.078743	4
CATGGGT	9225	36.763012	4
TAACGCA	1055	34.401703	4
GTATCAC	1580	32.85519	1
ATCACGC	1360	32.37393	3
AGATTAC	2110	32.14554	2
TAGTACT	1970	31.108107	5