SRR3559756.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559756.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3528454
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	89115	2.525610366466447	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41091	1.164561023042953	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33098	0.9380312170712726	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15534	0.44024946903091267	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10157	0.2878597822162341	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7516	0.21301113745566758	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6149	0.1742689574527541	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5247	0.14870535367614257	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5010	0.14198853095435	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4399	0.12467216520323066	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3619	0.10256616637201448	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3554	0.10072399980274648	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	37130	57.185585	1
CGCATAG	865	52.41807	1
TATCACG	620	46.0634	2
TATCAAC	46490	45.689365	2
TAACGCA	780	45.005325	4
ATCAACG	47470	44.734226	3
TCAACGC	48655	44.438965	4
CAACGCA	49300	44.098934	5
AACGCAG	50770	43.829945	6
TACAACG	805	42.868526	2
GGTATCA	19320	40.9468	1
ACGCAGA	55905	39.782776	7
CGCAGAG	56435	39.47354	8
GTATAAC	960	39.1519	1
GCAGAGT	59005	37.734077	9
ACAACGC	945	36.51815	3
GGTTTCA	1910	32.7974	1
AGATTAC	1740	32.484848	2
ATAACGC	1270	32.32645	3
TCACGCA	905	31.557247	4