SRR3559749.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559749.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2581110
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	107882	4.179674636106171	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47153	1.8268496886998231	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36154	1.400715196175289	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17158	0.6647527614088512	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10528	0.40788652943888487	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8471	0.3281921343917927	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7357	0.2850324085374122	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6638	0.25717617614127253	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4966	0.19239784433828858	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4843	0.1876324527044566	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3813	0.14772714064879064	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	3687	0.14284551995071887	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	3608	0.1397848212590707	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3519	0.13633669235328985	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2976	0.11529923172588538	No Hit
GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATACCACGT	2834	0.10979772268520133	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2765	0.10712445420768585	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	35225	66.96512	1
CGCATAG	615	65.97913	1
GGTATCA	15605	51.89062	1
TATCAAC	45690	51.68452	2
ATCAACG	46950	50.158062	3
TAACGCA	560	49.935616	4
TCAACGC	48155	49.656624	4
CAACGCA	48925	48.948074	5
AACGCAG	50005	48.6286	6
TACAACG	490	43.712635	2
ACGCAGA	55875	43.583767	7
CGCAGAG	56290	43.33811	8
GTATAAC	775	43.11805	1
GCAGAGT	58440	41.67244	9
ATAGTAC	1055	40.04114	4
ATAACGC	755	39.40248	3
AGATTAC	1270	39.352844	2
AGTGTAC	1115	38.953686	3
GACCGTT	540	38.56336	7
GTATCAC	760	37.68777	1