SRR3559740.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559740.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2993593
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	76947	2.5703894951651747	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31891	1.0653084771376737	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26719	0.892539500192578	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10857	0.362674551951451	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7742	0.25861899062431	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6228	0.2080443133051153	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4927	0.16458483167217455	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4698	0.15693516119258696	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4524	0.15112274781508375	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4410	0.14731461491258163	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4162	0.13903025561591037	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3924	0.13107994306507262	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3736	0.1247998642434025	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3443	0.1150122945904804	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3128	0.10448982209672457	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3086	0.10308682576422379	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	815	61.47614	1
GTATCAA	40930	53.59878	1
TACAACG	775	43.759857	2
TATCAAC	50285	43.471382	2
ATCAACG	51435	42.499435	3
TATCACG	590	42.354546	2
TCAACGC	52555	42.30696	4
CAACGCA	53170	42.041412	5
AACGCAG	54480	41.96972	6
AGATTAC	1500	40.45868	2
TAACGCA	685	39.9549	4
GCATAGT	1310	39.05979	2
ACGCAGA	59845	38.207207	7
CGCAGAG	60535	37.882355	8
ATAGTAC	1360	37.186283	4
GCAGAGT	62120	36.7721	9
GTACAAC	1020	36.255714	1
ACAACGC	910	35.306538	3
TCACGCA	750	34.905525	4
AGTGTAC	1660	34.766937	3