SRR3559739.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559739.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11718690
Sequences flagged as poor quality	0
Sequence length	125
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	229576	1.9590585637131797	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99618	0.8500779523991163	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	80241	0.6847267058007337	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29441	0.2512311529701699	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	18139	0.15478692584239365	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	16900	0.1442140717093805	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15245	0.13009133273429027	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	13664	0.11660006365899261	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	12672	0.10813495365096269	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	12191	0.1040303993023111	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	88130	74.196045	1
GGTATCA	33305	65.49834	1
TATCAAC	118815	55.038372	2
ATCAACG	120685	54.053143	3
TCAACGC	122235	53.48941	4
CAACGCA	123585	52.89548	5
AACGCAG	126055	52.000618	6
ACGCAGA	140875	46.46682	7
CGCAGAG	142745	45.872555	8
GCAGAGT	149320	43.72115	9
AGAGTAC	145675	33.563934	10-11
GTACTGG	10110	32.273857	1
TACTGGT	8405	31.783981	2
CATGGGT	16790	30.652834	4
AGTACTT	104245	29.874228	12-13
CAGAGTA	147515	29.561518	10-11
GAGTACT	93920	29.414318	12-13
GTACATG	86770	27.80761	1
TACTTTT	112245	27.768272	14-15
TACATGG	87630	27.470892	2