SRR3559719.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559719.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1473683
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47221	3.204284774948208	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23636	1.6038727460383273	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17487	1.1866188318654691	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8645	0.5866254818709316	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7625	0.5174111393020072	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4805	0.32605383925851084	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3559	0.24150376980666804	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2997	0.20336802419516276	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2683	0.18206086383570957	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2394	0.16245013344118106	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1634	0.11087866250747277	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1558	0.10572151541410194	No Hit

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	525	66.99233	1
TATCACG	280	61.623493	2
GTATCAA	18635	54.765453	1
TAACGCA	455	53.608616	4
ATAGTAC	695	50.50441	4
AGATTAC	955	49.218685	2
TACAACG	330	48.680622	2
TAGTACT	755	48.066776	5
GCATAGT	800	45.367634	2
ATAACGC	620	45.103733	3
GTATAAC	610	44.953175	1
TCACGCA	400	44.61936	4
GATTACT	1065	44.135067	3
TATCAAC	23295	43.82893	2
ATCAACG	23720	43.043633	3
TCAACGC	24370	42.79455	4
AACGCAG	25580	42.468052	6
CAACGCA	24835	42.256794	5
GTATCAC	500	40.536037	1
GGTATCA	10075	39.760937	1