SRR3559717.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559717.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1310357
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26906	2.053333557190903	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12631	0.9639357823860215	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9926	0.7575034895070579	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5992	0.4572799626361365	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4688	0.35776509760317227	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3637	0.27755794794853617	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3187	0.24321616170249788	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2100	0.16026166914817871	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	1875	0.14309077602515954	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1814	0.1384355561118077	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1784	0.13614610369540514	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1778	0.13568821321212463	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	1767	0.13484874732611038	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1490	0.11370947001466013	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	1489	0.11363315493411337	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	385	68.149284	1
TAACGCA	380	64.19101	4
TACAACG	275	60.578125	2
GTATAAC	470	52.018204	1
ATAGTAC	580	45.13346	4
GTATCAA	16640	41.10356	1
TAGTACT	660	40.564163	5
GCATAGT	695	37.66677	2
GTACAAC	445	37.520393	1
AGATTAC	690	37.077454	2
TATCACG	210	36.83109	2
ACAACGC	460	36.215183	3
CATGGGT	2265	34.672062	4
ATAACGC	900	33.71461	3
TATCAAC	20400	33.568787	2
TCAACGC	20910	33.4601	4
ATCAACG	20525	33.451313	3
CAACGCA	21195	33.262806	5
AACGCAG	21775	33.223804	6
GATTACT	775	33.01089	3