SRR3559708.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559708.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1890343
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41571	2.199124709113637	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19566	1.035050252784812	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14929	0.7897508547390606	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7616	0.4028898459168521	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7498	0.3966475925268589	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4370	0.23117497723958033	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3454	0.18271816278844633	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2968	0.15700854289406738	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2537	0.13420844788485475	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2253	0.1191847193869049	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1998	0.1056951040102246	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	405	55.822323	2
TAACGCA	510	53.662018	4
CGCATAG	655	52.801174	1
GTATCAA	20125	50.991978	1
AGATTAC	1130	44.226254	2
AAACGCA	690	43.111065	5
TATCACG	375	41.249756	2
TATCAAC	25575	40.128487	2
GTATAAC	715	40.030598	1
ACAACGC	580	40.005154	3
GATTACT	1250	39.980534	3
ATCAACG	25760	39.794106	3
TCAACGC	26410	39.58063	4
AACGCAG	27760	39.540737	6
ATAGTAC	895	39.220062	4
CAACGCA	26955	39.088326	5
TAGTACT	905	38.78567	5
ACGCATA	300	37.764977	1
GCATAGT	945	37.144924	2
GTACAAC	710	36.11328	1