SRR3559702.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559702.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3821034
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122970	3.218238832734804	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57854	1.5140927822154946	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40931	1.071202192914274	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20999	0.5495632857493548	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13839	0.3621794519493938	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10418	0.27264871236424487	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9556	0.25008937371402606	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8423	0.22043771398003786	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7766	0.2032434152640359	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6090	0.15938094243600032	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6016	0.15744429387438058	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5144	0.1346232459590781	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4907	0.12842073637659335	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4581	0.11988901433486329	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4362	0.11415758142952928	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4067	0.10643715810955882	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1265	65.51656	1
GTATCAA	51995	55.444916	1
TACAACG	915	53.969093	2
TATCACG	855	47.318493	2
AGATTAC	2235	45.520466	2
ATAGTAC	1850	45.02345	4
TAACGCA	925	44.380257	4
TATCAAC	65285	44.15384	2
GTATAAC	1110	44.04714	1
ATCAACG	66585	43.220303	3
TCACGCA	1040	42.905243	4
GGTTTCA	2075	42.81491	1
TCAACGC	68805	42.69859	4
AGTGTAC	1980	42.668884	3
TAGTACT	1995	42.34751	5
AACGCAG	71370	42.33109	6
CAACGCA	69845	42.284275	5
ACAACGC	1225	40.797287	3
GTACAAC	1390	40.750755	1
GTATCAC	1340	39.60154	1