SRR3559700.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559700.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6555197
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	149389	2.2789399006620243	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69949	1.0670770077543055	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49449	0.7543480386630638	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20877	0.3184801311081879	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11448	0.17464006039787972	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8632	0.1316817785949072	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8612	0.13137667716164747	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7759	0.11836410103311922	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7499	0.1143977824007425	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6917	0.10551933069288383	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	61910	61.68572	1
CGCATAG	1490	57.61489	1
TATCACG	1110	47.16929	2
TATCAAC	81780	46.816734	2
ATCAACG	82605	46.32755	3
TCAACGC	84745	46.02615	4
CAACGCA	85840	45.61195	5
AACGCAG	87735	45.43373	6
GGTATCA	29805	43.263924	1
TAACGCA	1265	42.32839	4
TACAACG	1245	41.098763	2
ACGCAGA	97250	40.90282	7
CGCAGAG	98835	40.409397	8
GCAGAGT	103585	38.46448	9
ATAGTAC	2395	36.51671	4
TAGTACT	2625	33.770184	5
TCACGCA	1575	33.2416	4
AGATTAC	2875	32.49088	2
ACAACGC	1600	31.236256	3
AGAGTAC	101775	30.535048	10-11