SRR3559694.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559694.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6537750
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	213108	3.2596535505334403	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	102711	1.5710450843179993	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	67128	1.026775266720202	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36204	0.5537684983365837	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23566	0.3604604030438606	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17649	0.2699552598370999	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16842	0.25761156361133414	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	15599	0.23859890635157355	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14373	0.21984627738901	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	11927	0.1824327941570112	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	8742	0.13371572788803487	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8393	0.12837749990440137	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	8296	0.12689380903215938	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	8045	0.12305456770295592	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7364	0.11263814003288593	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	7062	0.1080188138120913	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	1980	59.316994	1
TATCACG	1215	54.846893	2
GTATCAA	85675	54.513943	1
TACAACG	1690	51.75364	2
TAACGCA	1550	45.676796	4
AGATTAC	3390	43.527355	2
TATCAAC	108710	42.86605	2
ATCAACG	111285	41.87418	3
TCAACGC	114285	41.58428	4
TCACGCA	1635	41.482746	4
AACGCAG	119315	41.157578	6
CAACGCA	116335	41.127666	5
ATAGTAC	2940	39.663326	4
GTACAAC	2435	38.684433	1
AGTGTAC	3270	37.84651	3
ACGCAGA	130695	37.592075	7
ACAACGC	2345	37.29793	3
CGCAGAG	132245	37.286438	8
GTATCAC	2240	37.26131	1
GTATAAC	2195	36.938774	1