SRR3559680.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559680.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9453861
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	203694	2.154611750691067	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98678	1.043785179409767	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	62415	0.6602064489841769	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33825	0.3577903250322805	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21461	0.22700778020747292	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17138	0.18128043134968877	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16878	0.17853023225114056	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	14600	0.15443425707232208	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14323	0.1515042372634842	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	12345	0.1305815687368367	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	84365	59.33762	1
TATCAAC	109925	45.51348	2
ATCAACG	111480	44.798576	3
TCAACGC	113855	44.53678	4
CAACGCA	115480	44.049175	5
AACGCAG	118300	43.82392	6
CGCATAG	1760	42.341434	1
TATCACG	1500	40.85434	2
ACGCAGA	130305	39.722504	7
CGCAGAG	132440	39.180984	8
GCAGAGT	138670	37.343483	9
GGTATCA	42340	34.877346	1
TACAACG	1655	34.152134	2
CATGGGG	27270	31.37272	4
CATGGGT	10810	29.554731	4
AGAGTAC	135985	29.429306	10-11
AGTACTT	93815	29.121426	12-13
TCACGCA	2245	27.561028	4
ACATGGG	76875	27.273632	3
GTACATG	82780	26.560347	1