SRR3559676.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559676.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1726312
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48723	2.8223750978965563	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24420	1.4145762758991423	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15574	0.9021544193633596	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9478	0.5490316929963992	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9471	0.5486262043014241	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6198	0.359031275922313	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3925	0.22736330396822824	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3841	0.222497439628526	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3508	0.20320776313899228	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2625	0.15205826061569402	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2271	0.13155211804123473	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2270	0.1314941910848097	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	515	64.775955	1
TATCACG	275	56.261063	2
GTATCAA	17930	54.686806	1
TAACGCA	360	42.970978	4
TAGTACT	820	42.80974	5
TATCAAC	22965	42.49567	2
ATCAACG	23085	42.19133	3
TCAACGC	23800	41.623795	4
GCATAGT	805	41.396103	2
AACGCAG	24890	41.32967	6
CAACGCA	24270	41.06288	5
TACAACG	410	40.638855	2
ATAGTAC	840	40.373833	4
GTATAAC	450	39.71383	1
ACGCAGA	27530	37.258286	7
ACAACGC	500	36.88893	3
CGCAGAG	27930	36.767292	8
AAACGCA	745	36.73719	5
ATCACGC	430	35.9757	3
GCAGAGT	29065	35.290573	9