SRR3559675.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559675.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3774045
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	74121	1.9639670433182437	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36261	0.9607993545386979	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22397	0.593448143835063	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13940	0.3693649651766209	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11668	0.30916430514209553	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8505	0.22535502358874893	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7096	0.18802107553036596	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6031	0.15980201613918224	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5736	0.15198546917167124	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5355	0.14189020003736044	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	755	51.2883	1
GTATCAA	33750	49.82978	1
TATCACG	625	48.556442	2
TAACGCA	715	42.43882	4
TCAACGC	43810	39.139915	4
ATCAACG	42805	39.04419	3
TATCAAC	42860	38.999252	2
CAACGCA	44280	38.872276	5
AACGCAG	45585	38.803608	6
TACAACG	765	37.336746	2
ACGCAGA	49855	35.48014	7
CGCAGAG	50515	35.12258	8
GCAGAGT	52830	33.53847	9
ACAACGC	985	31.409882	3
GTATAAC	1105	29.651884	1
GTATCAC	1395	29.466381	1
CATGGGG	10250	29.429527	4
ATCACGC	1075	29.333681	3
TAGTACT	1365	29.203932	5
ATAGTAC	1355	28.980362	4