SRR3559673.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559673.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2249710
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53874	2.3947086513372833	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26149	1.1623275888892346	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16665	0.7407621426761671	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9881	0.4392121651235048	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8533	0.3792933311404581	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6112	0.2716794609082948	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5702	0.25345488974134445	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4258	0.18926883909481668	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4192	0.18633512763867344	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4164	0.18509052277849145	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3474	0.15441990300972125	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2957	0.13143916326993257	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2717	0.12077112161122988	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2681	0.11917091536242448	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2674	0.11885976414737899	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	2445	0.10868067439803353	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	2427	0.10788057127363083	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCACG	410	53.711304	2
CGCATAG	515	49.756535	1
GTATCAA	24410	49.143364	1
TAACGCA	385	41.72593	4
TATCAAC	30130	39.586433	2
ATCAACG	30450	39.040123	3
TCAACGC	31400	38.863243	4
CAACGCA	31655	38.681744	5
AACGCAG	32320	38.639763	6
ACGCAGA	35385	35.191956	7
CGCAGAG	35820	34.91407	8
TCACGCA	655	34.517975	4
ATAGTAC	790	33.89132	4
GCAGAGT	37580	33.199768	9
GTATAAC	665	31.364277	1
GTATCAC	870	30.823513	1
CATGGGG	6780	30.100067	4
AGATTAC	960	29.758966	2
TACAACG	480	28.519009	2
TTCAACG	1485	28.046238	4