Basic Statistics
Measure | Value |
---|---|
Filename | SRR3559672.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5402228 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 109234 | 2.022017582375272 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 52719 | 0.9758751389241624 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32860 | 0.6082675518323181 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 19050 | 0.3526322843093627 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14139 | 0.26172534739370495 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10788 | 0.1996953849411761 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8262 | 0.1529368993681866 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7703 | 0.14258931685223208 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 36770 | 0.0 | 67.88956 | 1 |
TATCAAC | 49270 | 0.0 | 50.4965 | 2 |
ATCAACG | 49370 | 0.0 | 50.290806 | 3 |
TCAACGC | 50420 | 0.0 | 49.97513 | 4 |
CAACGCA | 51090 | 0.0 | 49.436207 | 5 |
AACGCAG | 52625 | 0.0 | 48.90956 | 6 |
GGTATCA | 15595 | 0.0 | 47.982937 | 1 |
ACGCAGA | 58325 | 0.0 | 44.139915 | 7 |
CGCAGAG | 59430 | 0.0 | 43.379276 | 8 |
GCAGAGT | 63010 | 0.0 | 40.886295 | 9 |
TATCACG | 730 | 0.0 | 33.421402 | 2 |
AGAGTAC | 61070 | 0.0 | 32.164936 | 10-11 |
TAACGCA | 810 | 0.0 | 31.585428 | 4 |
CGCATAG | 1075 | 0.0 | 29.92732 | 1 |
AGTACTT | 43980 | 0.0 | 29.667622 | 12-13 |
GTACATG | 37775 | 0.0 | 29.414192 | 1 |
CATGGGG | 15780 | 0.0 | 29.296608 | 4 |
ACATGGG | 36395 | 0.0 | 29.23002 | 3 |
CATGGGT | 6975 | 0.0 | 29.002674 | 4 |
TACATGG | 38455 | 0.0 | 28.813135 | 2 |