SRR3559671.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559671.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2433719
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49516	2.034581642334222	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23997	0.9860218044893433	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15247	0.6264897467620543	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9431	0.3875139241629786	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8354	0.3432606640290025	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5727	0.23531886795476387	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3894	0.16000203803315008	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3742	0.15375645257320175	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3667	0.15067474922125357	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2653	0.10901011990291402	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2605	0.10703782975766717	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	21315	54.445995	1
TATCACG	365	48.909218	2
CGCATAG	560	47.87258	1
TATCAAC	26945	42.93193	2
TAACGCA	460	42.684856	4
ATCAACG	27425	42.15363	3
TCAACGC	28220	41.74706	4
CAACGCA	28520	41.474823	5
AACGCAG	29445	41.26226	6
ACGCAGA	32525	37.391457	7
CGCAGAG	33040	36.988712	8
GCAGAGT	34505	35.34928	9
ACAACGC	540	35.258595	3
CATGGGT	3970	35.07059	4
TCACGCA	535	33.364544	4
GGTATCA	11470	30.54051	1
GTATCAC	815	29.970127	1
CATGGGG	7045	29.64448	4
GTATAAC	745	29.58747	1
ACATGGG	20325	29.156649	3