SRR3559659.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559659.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3565770
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	83116	2.3309411431472022	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39643	1.1117654812284585	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24797	0.6954178199939984	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15170	0.42543405772105325	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11993	0.3363368921719572	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8381	0.23504039800660168	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7226	0.20264907719791236	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6454	0.18099877445825166	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6187	0.1735109106868923	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5394	0.15127167484161907	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5169	0.1449616772814848	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4363	0.12235786379940378	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3928	0.11015853518314418	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	730	54.68158	1
GTATCAA	35325	53.532047	1
TAACGCA	680	46.372974	4
TATCAAC	44180	42.654316	2
ATCAACG	45005	41.868298	3
TCAACGC	46005	41.39793	4
CAACGCA	46575	41.019035	5
AACGCAG	47830	40.62691	6
ACGCAGA	52555	37.04224	7
CGCAGAG	53205	36.634426	8
GTATAAC	1005	36.162037	1
TACAACG	765	35.779724	2
GCAGAGT	55355	35.14705	9
GTACTGG	3230	31.910433	1
ATAGTAC	1290	31.362968	4
ATAACGC	1185	31.12944	3
GACCGTT	755	30.733757	7
TACTGGT	2790	30.498075	2
ACAACGC	920	30.39541	3
GGTATCA	19530	30.231554	1