SRR3559656.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559656.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1905515
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	53239	2.7939428448477184	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25731	1.3503436078960283	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16144	0.8472250284043947	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9905	0.5198069813147627	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8830	0.46339178647242346	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6077	0.31891640842501895	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4477	0.23494960679921176	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4257	0.22340417157566328	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4101	0.21521740841714707	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3418	0.17937407997313062	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2800	0.1469419028451626	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2405	0.12621259869379145	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2372	0.12448078341025916	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	2365	0.12411342865314627	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2121	0.11130849140521067	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2105	0.1104688233889526	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	425	56.072693	1
GTATCAA	22680	52.616047	1
TACAACG	390	42.724007	2
TATCAAC	28435	41.81391	2
ATCAACG	28905	41.145958	3
TCAACGC	29665	40.673447	4
AACGCAG	30740	40.218796	6
CAACGCA	30120	40.138035	5
ACGCAGA	33710	36.71064	7
CGCAGAG	34095	36.522953	8
ATAGTAC	695	35.954384	4
TAACGCA	505	35.344128	4
GCAGAGT	35335	35.190754	9
ACAACGC	475	35.071297	3
CATGGGT	3230	33.70823	4
GGTTTCA	1070	32.850998	1
GTACAAC	625	31.45678	1
TATCACG	370	30.558388	2
TCACGCA	420	29.747972	4
GTATAAC	615	29.062067	1