SRR3559654.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559654.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3282146
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56397	1.7182965047868073	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26424	0.8050830158073407	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17174	0.5232552116816254	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10209	0.3110464921426408	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8321	0.2535231522302786	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5962	0.18164944521054213	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4140	0.1261369847654553	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4006	0.12205429008947195	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3526	0.10742971214565106	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	23670	59.283607	1
TATCAAC	30190	46.18154	2
ATCAACG	30255	45.939053	3
TCAACGC	30765	45.81572	4
CAACGCA	31350	45.09363	5
AACGCAG	32485	44.305676	6
ACGCAGA	35740	40.237267	7
CGCAGAG	36400	39.621506	8
GCAGAGT	38185	37.784935	9
TAACGCA	605	34.420647	4
GGTATCA	11900	34.14911	1
CGCATAG	510	32.71371	1
TACAACG	660	32.457706	2
CATGGGG	10310	30.182096	4
ACAACGC	715	29.957312	3
AGAGTAC	37150	29.196283	10-11
AGTACTT	23115	29.08602	12-13
CATGGGT	4805	28.727705	4
ACATGGG	24650	28.40965	3
GTACATG	26475	27.86292	1