SRR3559653.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559653.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2143572
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38249	1.7843580714806875	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17612	0.8216192411544843	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12293	0.5734820197315509	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5970	0.27850709003476437	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3560	0.1660779297359734	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3437	0.1603398439613878	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2818	0.13146281067302615	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2798	0.13052978859585776	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2242	0.10459177485057651	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2206	0.1029123351116734	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	18990	54.705284	1
CGCATAG	385	52.60487	1
TATCACG	280	46.751553	2
TATCAAC	23580	43.705437	2
ATCAACG	23790	43.342625	3
TCAACGC	24205	43.165882	4
CAACGCA	24590	42.585842	5
AACGCAG	25100	42.573925	6
TAACGCA	325	42.108105	4
ACGCAGA	27650	38.583023	7
CGCAGAG	28135	37.960213	8
GCAGAGT	29265	36.413143	9
GGTATCA	10280	32.159378	1
TACAACG	465	30.710693	2
CATGGGG	6815	30.6452	4
CATGGGT	2840	28.283726	4
AGAGTAC	28610	27.939962	10-11
AGTACTT	18260	27.51692	12-13
ACATGGG	18155	27.26705	3
GAGTACT	16450	26.837309	12-13