SRR3559648.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559648.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4853261
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	92799	1.912095805274021	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46734	0.962940175688058	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30001	0.6181616855141316	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14801	0.3049702045696697	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9275	0.19110861748420288	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7760	0.15989249290322527	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7318	0.15078521431260344	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7150	0.14732362426005938	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6430	0.13248823832058487	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6158	0.1268837591878945	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	41145	55.99654	1
TATCAAC	53300	43.074	2
ATCAACG	53555	42.683643	3
TCAACGC	54510	42.416103	4
CAACGCA	55375	41.8498	5
AACGCAG	56655	41.69192	6
TATCACG	620	38.392685	2
ACGCAGA	62315	37.838257	7
CGCAGAG	63205	37.409	8
GCAGAGT	65895	35.791576	9
TAACGCA	685	34.7435	4
GGTATCA	21945	34.561848	1
CGCATAG	920	29.790247	1
AGTACTT	42700	28.864162	12-13
AGAGTAC	64565	28.59001	10-11
CATGGGG	13955	27.883806	4
GGACCGT	1410	27.427986	6
GAGTACT	39355	26.713978	12-13
TACAACG	955	24.925095	2
ACATGGG	38205	24.683867	3