SRR3559644.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559644.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3786423
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	78657	2.077343181150125	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38107	1.0064115921543895	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23897	0.6311233583780786	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14592	0.38537691113750366	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12448	0.3287535491940547	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9104	0.24043800705837673	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7088	0.18719514433543216	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6507	0.17185084709236131	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6005	0.15859295171194557	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5255	0.1387853390918025	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3919	0.10350137847778762	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	32325	55.13035	1
TATCAAC	41550	42.86618	2
ATCAACG	41845	42.471363	3
TCAACGC	42835	42.07315	4
CGCATAG	670	41.796116	1
CAACGCA	43320	41.711987	5
AACGCAG	44295	41.706688	6
TACAACG	645	39.672344	2
ACGCAGA	48680	37.888718	7
CGCAGAG	49665	37.340435	8
GCAGAGT	51655	35.878872	9
CATGGGT	7290	33.299458	4
TATCACG	495	32.45919	2
CATGGGG	11985	31.325344	4
GGTATCA	17330	31.320791	1
ACATGGG	33820	28.869516	3
GTACATG	36760	28.380726	1
AGTACTT	30920	28.314823	12-13
TACATGG	36940	28.127197	2
AGAGTAC	50800	27.927155	10-11