SRR3559636.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559636.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5577416
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	141377	2.534811819667029	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	68206	1.2228960507876765	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41841	0.7501861076885784	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25505	0.45729061629973444	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22284	0.39953985860118735	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16218	0.29077981631637306	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	13342	0.23921471878733808	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11636	0.20862707748534448	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	10883	0.19512620181101786	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10704	0.1919168303027782	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	55685	55.21358	1
TATCAAC	70465	43.549324	2
ATCAACG	71425	42.850693	3
TCAACGC	72705	42.62822	4
CAACGCA	73665	42.040382	5
AACGCAG	74960	41.852715	6
CGCATAG	855	38.329308	1
ACGCAGA	82100	38.133186	7
CGCAGAG	83030	37.756226	8
GCAGAGT	86155	36.366024	9
TACAACG	1090	31.66352	2
GGTATCA	29720	31.516512	1
TAACGCA	870	31.459057	4
TATCACG	740	31.361053	2
CATGGGT	8130	30.956863	4
CATGGGG	16920	30.100971	4
AGTACTT	54530	29.590319	12-13
AGAGTAC	84985	28.234581	10-11
GAGTACT	50370	27.42156	12-13
ACAACGC	1350	26.443844	3