SRR3559629.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559629.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2348541
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56990	2.4266129482091223	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26565	1.1311277938090074	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18456	0.7858495976863934	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9784	0.41659907150865155	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8077	0.3439156480555375	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5475	0.23312345835137643	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4122	0.17551322289029658	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3724	0.15856653130603213	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3197	0.13612706782636538	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3189	0.13578643080959626	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3011	0.12820725718648301	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	24855	55.683804	1
CGCATAG	470	51.99558	1
TAACGCA	405	47.00984	4
TATCAAC	30830	44.855103	2
AACGCAG	31785	44.775658	6
ATCAACG	31440	43.922436	3
TCAACGC	32205	43.359432	4
CAACGCA	32505	43.069077	5
ACGCAGA	34935	40.63617	7
CGCAGAG	35430	40.169193	8
GCAGAGT	37340	38.050735	9
GGTATCA	13040	35.607407	1
TATCACG	345	34.495323	2
ACGGTAC	640	31.607693	3
ATAACGC	690	31.041824	3
ATAGTAC	795	30.683897	4
GACCGTT	450	30.410135	7
AGAGTAC	36460	29.675613	10-11
TAGTACT	835	29.21401	5
CATGGGT	2830	28.802351	4