SRR3559622.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559622.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3142777
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	89263	2.8402587902355148	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39777	1.26566409261618	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	26895	0.8557718221814656	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15148	0.4819941090315985	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11212	0.3567545517865251	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7784	0.247679043088326	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6571	0.20908260433368325	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5886	0.18728659398996492	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4947	0.15740855937280948	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3978	0.12657595495957874	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3895	0.12393497852377054	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3558	0.11321197781452517	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	37455	54.565075	1
AACGCAG	46845	44.769314	6
TATCAAC	46040	44.255363	2
ATCAACG	46710	43.586773	3
CGCATAG	590	43.451042	1
TCAACGC	47590	43.293365	4
CAACGCA	48180	42.87434	5
ACGCAGA	51815	40.475124	7
CGCAGAG	52160	40.24227	8
GCAGAGT	54540	38.486187	9
TACAACG	525	37.40435	2
GGTATCA	20190	31.300646	1
TAACGCA	570	30.269672	5
AGAGTAC	53750	29.388508	10-11
TATCACG	610	29.2657	2
AGTACTT	36070	29.023409	12-13
CATGGGG	10165	28.679611	4
ACAACGC	730	28.52527	3
TCACGCA	675	28.205303	4
GTACTGG	2390	27.6891	1