SRR3559621.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559621.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1575000
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	56207	3.568698412698413	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25276	1.604825396825397	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17640	1.1199999999999999	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10191	0.6470476190476191	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7683	0.4878095238095238	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5153	0.3271746031746032	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4223	0.2681269841269841	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3917	0.2486984126984127	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3761	0.23879365079365078	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2940	0.18666666666666668	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2410	0.15301587301587302	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2395	0.15206349206349207	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	1998	0.12685714285714286	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	1887	0.11980952380952381	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	1584	0.10057142857142858	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TACAACG	355	55.314156	2
CGCATAG	390	53.517128	1
GTATCAA	24165	52.415176	1
ATAACGC	450	43.63118	3
AACGCAG	30500	42.81838	6
TATCAAC	29425	42.81097	2
TAACGCA	445	42.784405	4
ATCAACG	30110	41.81195	3
TCAACGC	30875	41.21918	4
CAACGCA	31300	40.773544	5
GTATAAC	500	40.55069	1
AAACGCA	530	40.4131	5
GTACAAC	550	40.116993	1
ACAACGC	500	39.268063	3
GACCGTT	365	39.121357	7
ACGCAGA	33550	38.961266	7
CGCAGAG	33885	38.681435	8
GCAGAGT	35215	37.220512	9
TTCAACG	860	32.51584	4
CATGGGG	4820	31.6001	4