SRR3559610.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559610.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2813963
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	59288	2.106921803875886	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27287	0.9697000280387481	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19358	0.6879266003142188	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9393	0.33379969814812777	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6372	0.22644220979451402	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4712	0.16745067365846672	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4206	0.14946891625796074	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3575	0.12704502511227048	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	3546	0.12601445008338774	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	26740	57.918335	1
AACGCAG	34860	45.739986	6
TATCAAC	33775	45.73616	2
ATCAACG	33945	45.394672	3
TCAACGC	34780	44.971973	4
CAACGCA	35265	44.47157	5
TATCACG	370	41.814026	2
CGCATAG	515	41.67097	1
ACGCAGA	38595	41.251873	7
CGCAGAG	39155	40.859417	8
GCAGAGT	41145	38.854313	9
TAACGCA	570	38.6196	4
GGTATCA	13500	35.63511	1
CATGGGT	3855	31.020771	4
AGAGTAC	40460	30.28479	10-11
TACAACG	555	30.020325	2
CATGGGG	9215	29.763672	4
AGTACTT	26580	29.669981	12-13
ACATGGG	24950	28.757933	3
GTACATG	26820	28.161524	1