SRR3559601.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559601.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2523040
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41461	1.6432953896886295	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19950	0.7907127909188915	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13769	0.5457305472763017	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7950	0.3150960745767011	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7245	0.28715359249159744	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4669	0.1850545373834739	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3128	0.1239774240598643	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2778	0.11010526983321707	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2720	0.10780645570422982	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	18750	53.742596	1
TAACGCA	465	47.34065	4
AACGCAG	24165	43.159912	6
TATCAAC	23520	42.8806	2
CGCATAG	445	42.876877	1
ATCAACG	23410	42.8745	3
TCAACGC	23850	42.607388	4
CAACGCA	24220	42.153008	5
ACGCAGA	26735	38.877483	7
CGCAGAG	27345	38.16252	8
GCAGAGT	28745	36.283157	9
GGTATCA	10060	32.717064	1
GTATAAC	810	30.917007	1
ACATGGG	18945	30.148245	3
CATGGGG	8010	30.082085	4
GTACATG	19870	29.737812	1
TACATGG	20105	29.41784	2
AGAGTAC	27765	28.960348	10-11
TATCACG	330	28.849249	2
CATGGGT	2880	28.714928	4