SRR3559600.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559600.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1115728
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23982	2.1494486111310285	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11217	1.0053525590466494	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8071	0.7233841939971032	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5419	0.48569185321153546	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4497	0.40305522492937346	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2841	0.2546319533076162	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2278	0.20417162605939798	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1766	0.15828230536474838	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1608	0.14412114780663388	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1284	0.11508181205455094	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCACG	195	64.081894	2
TAACGCA	275	54.085407	4
GTATCAA	11445	47.491028	1
CGCATAG	260	45.844704	1
TCACGCA	325	43.933994	4
GTATAAC	375	42.910645	1
GTATCAC	440	39.28058	1
AACGCAG	14485	38.85487	6
TACAACG	185	38.59759	2
TATCAAC	14295	37.921444	2
ATCAACG	14330	37.69749	3
TCAACGC	14660	37.538815	4
CAACGCA	14775	37.20637	5
ATAACGC	490	36.424866	3
ATCACGC	380	36.009495	3
CGCAGAG	16360	34.72905	8
ACGCAGA	16205	34.657383	7
AAACGCA	320	33.465347	5
GCAGAGT	17260	32.84921	9
CATGGGG	3225	30.438763	4