SRR3559597.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559597.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3150035
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	69474	2.2054993039759876	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32941	1.045734412474782	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21100	0.6698338272431894	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12767	0.40529708400065395	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11079	0.3517103778211988	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7422	0.23561642965871807	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5395	0.17126793829274914	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5024	0.15949029137771487	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4282	0.1359349975476463	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	28750	55.85184	1
CGCATAG	530	49.50121	1
AACGCAG	37380	44.34334	6
TATCAAC	36575	43.746994	2
ATCAACG	36975	43.252148	3
TCAACGC	37855	42.93822	4
CAACGCA	38100	42.818264	5
ACGCAGA	41435	39.988724	7
CGCAGAG	42065	39.58783	8
GCAGAGT	44415	37.493237	9
GGTATCA	15160	34.886982	1
TACAACG	580	33.85538	2
CATGGGG	9640	30.673683	4
ACATGGG	26600	30.508394	3
CATGGGT	4390	30.357788	4
GTACATG	28045	30.020521	1
TACATGG	28150	29.910233	2
AGAGTAC	43420	29.898172	10-11
GTATAAC	760	29.028667	1
TAACGCA	495	28.846468	4