SRR3559593.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559593.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6079048
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	122878	2.0213362355421443	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55476	0.9125771008881653	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37399	0.6152114607418794	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19741	0.324738347188573	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14592	0.2400375848323619	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10913	0.17951824035605576	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9213	0.15155333532487325	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8223	0.13526789063024341	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7479	0.12302913219306708	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	54975	55.947083	1
AACGCAG	70540	44.340073	6
TATCAAC	69170	44.32847	2
ATCAACG	70030	43.727356	3
TCAACGC	71060	43.503796	4
CAACGCA	71960	43.042725	5
ACGCAGA	77810	40.12844	7
CGCAGAG	78975	39.604618	8
GCAGAGT	83245	37.551685	9
GGTATCA	28915	31.814116	1
TATCACG	900	30.412748	2
CGCATAG	1070	30.08757	1
AGTACTT	51340	29.725977	12-13
CATGGGG	19710	29.61185	4
AGAGTAC	81460	29.30678	10-11
ACATGGG	51300	27.93847	3
CATGGGT	8580	27.806112	4
GAGTACT	47715	27.58881	12-13
GTACATG	55030	27.463482	1
TAACGCA	870	27.354195	4