SRR3559590.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559590.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3529016
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	65434	1.8541712477359127	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32235	0.9134274256619975	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20483	0.5804167507316488	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11926	0.3379412278096784	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10068	0.2852919907418952	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7064	0.20016911229645884	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5808	0.1645784547307238	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5033	0.14261765886014685	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4763	0.13496680094394584	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4234	0.11997678673035203	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	3887	0.11014401748249371	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	31025	52.480408	1
TATCAAC	38525	42.198177	2
AACGCAG	39910	41.91943	6
ATCAACG	38885	41.6621	3
TCAACGC	39560	41.50768	4
CAACGCA	40015	41.11063	5
ACGCAGA	43900	38.16365	7
CGCATAG	610	38.117294	1
CGCAGAG	44630	37.52609	8
GCAGAGT	46890	35.692036	9
TATCACG	565	33.702118	2
CATGGGG	10610	32.46675	4
GGTATCA	17285	31.146242	1
TAACGCA	535	30.02518	4
GGACCGT	1095	29.883425	6
TACTGGT	2285	29.427128	2
ACATGGG	28680	28.875916	3
AGAGTAC	45710	27.96443	10-11
AGTACTT	29995	27.719067	12-13
TACAACG	580	27.700745	2