SRR3559578.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559578.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2426797
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41663	1.716789661434393	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21321	0.8785654506742839	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20254	0.834598031891419	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16304	0.6718320485809073	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10065	0.4147442081064052	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8947	0.36867525384282246	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7290	0.3003959540085141	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6577	0.2710156638565154	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4192	0.17273797519940895	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	3867	0.15934583733208835	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	3841	0.1582744663027027	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3770	0.1553487992609188	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3611	0.14879695335044504	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3451	0.142203900861918	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2954	0.12172423156943082	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2802	0.1154608317053301	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	2686	0.110680868651148	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTACGCTATCTCGTATGCCGT	2675	0.11022759629256175	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	705	69.89624	1
TATCACG	325	60.45332	2
TAACGCA	710	58.697598	4
GTATAAC	875	52.88247	1
TACAACG	640	52.095192	2
AGATTAC	1545	48.554745	2
ACAACGC	780	45.03467	3
GATTACT	1815	41.65975	3
GCATAGT	1205	41.00914	2
TAGTACT	1200	40.652847	5
ATAGTAC	1230	39.690754	4
ATAACGC	1415	39.551323	3
GTACAAC	950	38.58649	1
GTATCAC	775	36.44393	1
TCACGCA	580	35.92698	4
AGTGTAC	1385	35.249557	3
AAACGCA	980	35.209534	5
GTGTTAT	820	35.17681	1
GTATCAA	29555	33.83385	1
ATTACTT	2280	33.423794	4