SRR3559550.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559550.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3511554
Sequences flagged as poor quality	0
Sequence length	125
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63861	1.8185965529791084	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32135	0.9151219089895811	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24585	0.7001173839274577	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22539	0.6418525815066493	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14052	0.40016471340039195	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10567	0.30092090282535877	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9301	0.26486848842421334	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	5428	0.15457543868042467	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5078	0.14460834149211432	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4912	0.1398810896828014	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	3525	0.10038290739655435	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	975	62.829647	1
TAACGCA	770	48.699265	4
TACAACG	795	48.665226	2
TATCACG	425	47.617054	2
GTATCAA	32375	47.471134	1
ACAACGC	920	43.347046	3
AGATTAC	1800	40.011555	2
TAGTACT	1565	39.15481	5
ATAGTAC	1610	38.078857	4
ATCAACG	40740	37.57703	3
TCAACGC	41680	37.415028	4
TATCAAC	41150	37.33281	2
AACGCAG	43595	37.01073	6
CAACGCA	42315	36.990376	5
GTACAAC	1325	36.261288	1
GCATAGT	1805	33.965073	2
ACGCAGA	47740	33.896988	7
GTATAAC	1210	33.751465	1
CGCAGAG	48395	33.561146	8
GATTACT	2220	32.709915	3