SRR3559535.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559535.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1738966
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40208	2.3121786164881892	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18681	1.0742590711951816	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14340	0.8246279685744287	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9888	0.5686137624312378	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7748	0.44555212695360347	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5291	0.3042612679028802	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4384	0.2521038364177333	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3103	0.17843937144256988	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2921	0.16797338188325706	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2601	0.14957164199875098	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	2121	0.12196903217199186	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2092	0.12030137449495851	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2000	0.115010874278163	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1997	0.11483835796674574	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1882	0.10822523269575139	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	505	61.788258	1
TAACGCA	410	47.951126	4
GTATCAA	19850	47.188522	1
TATCACG	210	42.554035	2
TACAACG	370	41.863968	2
TAGTACT	745	40.72235	5
AGATTAC	910	39.935326	2
ATAGTAC	765	39.717094	4
GTATAAC	555	38.92275	1
TATCAAC	24345	38.493526	2
ATCAACG	24465	38.256016	3
TCAACGC	25085	38.141716	4
CAACGCA	25335	37.943676	5
AACGCAG	26050	37.81565	6
ACGCAGA	28530	34.69529	7
CGCAGAG	28855	34.572514	8
ACAACGC	440	33.8498	3
GCATAGT	935	33.770153	2
GATTACT	1080	33.649208	3
GCAGAGT	29835	33.436897	9