SRR3559533.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559533.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4153590
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	106211	2.5570891686468813	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	46507	1.1196820100202476	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31974	0.7697919149458661	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17525	0.42192416680510114	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15910	0.3830421394504513	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10307	0.24814678386648656	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	9115	0.21944871785611963	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8006	0.19274892322063564	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7680	0.18490029107350509	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6928	0.16679547090589106	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5970	0.14373108563916998	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5338	0.12851533251957947	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	5209	0.12540958544295416	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	4800	0.11556268192094069	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	4401	0.1059565339862625	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	47580	52.938297	1
CGCATAG	830	46.26514	1
TATCACG	730	43.236244	2
TAACGCA	1025	42.99402	4
TATCAAC	58875	42.776154	2
ATCAACG	59475	42.25501	3
TCAACGC	60775	41.90969	4
CAACGCA	61520	41.522697	5
AACGCAG	63330	41.256527	6
TCACGCA	840	38.283768	4
ACGCAGA	68615	37.99984	7
CGCAGAG	69415	37.664738	8
TACAACG	795	36.704887	2
GCAGAGT	71945	36.28235	9
GTATAAC	1380	33.9131	1
AGATTAC	1820	32.720776	2
ATAACGC	1700	30.476881	3
GTATCAC	1410	29.787283	1
ATCACGC	1045	29.633793	3
CATGGGG	14170	29.545113	4