SRR3559530.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559530.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5588231
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	123248	2.2054922210624435	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58528	1.0473439626958871	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39020	0.6982531681313818	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25337	0.45339929576998517	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23566	0.4217076924701216	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16181	0.2895549593422319	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16012	0.2865307464920473	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	11104	0.19870331058254392	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10414	0.18635593267350617	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9736	0.17422329177158208	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	7642	0.1367516840302414	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7506	0.1343179979496195	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	5938	0.10625902902009599	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATCACG	995	49.07615	2
CGCATAG	1215	48.87041	1
TAACGCA	1200	44.16643	4
GTATCAA	62105	43.072033	1
TACAACG	1410	40.122154	2
ACAACGC	1540	36.348854	3
TATCAAC	75110	35.622005	2
GTACAAC	1925	35.51904	1
TCACGCA	1395	35.43133	4
ATCACGC	1380	35.38493	3
ATCAACG	75775	35.254692	3
TCAACGC	77410	35.217808	4
AACGCAG	80180	34.990337	6
CAACGCA	78070	34.96828	5
ACGCAGA	86790	32.271187	7
GTATCAC	1880	32.22186	1
CGCAGAG	87920	31.944382	8
GTATAAC	1890	31.099352	1
GCAGAGT	91500	30.681532	9
CATGGGG	13580	30.082087	4