SRR3559527.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559527.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4899457
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

$Duplication level graph$

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	87058	1.7768907860605778	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	41052	0.8378887701228932	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28462	0.5809215184458196	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13363	0.27274451025899404	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8968	0.18304069206036505	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8563	0.1747744699055426	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6851	0.13983182217947826	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	6728	0.13732133989542106	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6170	0.12593232270433233	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5811	0.11860498010289712	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5102	0.1041339887256894	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	5020	0.10246033386965127	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	43020	52.647022	1
CGCATAG	940	49.120197	1
TATCACG	725	47.64454	2
TATCAAC	54440	41.472363	2
ATCAACG	54650	41.225822	3
TCAACGC	56010	40.89468	4
CAACGCA	56775	40.508343	5
AACGCAG	58530	40.40158	6
TACAACG	950	37.61411	2
ACGCAGA	64305	36.661873	7
CGCAGAG	65105	36.339302	8
GCAGAGT	67645	34.79012	9
CATGGGG	15580	33.982666	4
ACAACGC	1110	33.801865	3
CATGGGT	8485	32.70824	4
TAACGCA	1060	32.02522	4
AAACGCA	1520	31.310223	5
ATCACGC	1210	31.008324	3
GGTATCA	24195	30.137358	1
ACATGGG	44020	29.967243	3