SRR3559505.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559505.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2941329
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	85483	2.9062712807713793	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	40410	1.3738687511665646	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28669	0.9746954522938441	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15412	0.5239808263543453	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13545	0.46050611815271264	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8716	0.2963286323971239	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	7614	0.25886257538684043	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6780	0.23050804585274207	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6178	0.21004110726817707	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5210	0.17713081399598618	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3760	0.12783337056140268	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3129	0.10638048310814602	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	3002	0.10206270702801352	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	710	60.83878	1
TACAACG	665	56.417423	2
GTATCAA	35620	51.302948	1
TAACGCA	645	48.934807	4
GTACAAC	965	43.518814	1
GTATAAC	810	42.217854	1
AGATTAC	1315	42.11643	2
ACAACGC	895	41.25441	3
TATCAAC	44755	40.79669	2
TATCACG	615	40.66947	2
ATCAACG	45235	40.219654	3
TCAACGC	46365	39.907333	4
CAACGCA	47080	39.348293	5
AACGCAG	48260	39.17512	6
ATAGTAC	1110	38.628807	4
TAGTACT	1140	38.094456	5
GATTACT	1550	36.884277	3
ACGCAGA	52695	35.798973	7
CGCAGAG	53560	35.32078	8
GCAGAGT	55160	34.263893	9