SRR3559500.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559500.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5496053
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	154997	2.820151115718862	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	75140	1.3671629440254671	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	49875	0.9074694148691798	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28458	0.5177897665834008	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28304	0.5149877557585416	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17937	0.32636148159415496	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16688	0.3036360821120175	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12694	0.2309657494205387	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12572	0.22874597461123464	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	12569	0.22869138998477634	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	8140	0.14810628645684457	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7924	0.14417619335184723	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	7401	0.13466027347261753	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	6184	0.11251711000603525	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	6040	0.10989704793603701	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	875	50.115677	1
GTATCAA	69670	48.46482	1
TAACGCA	1035	44.87902	4
TACAACG	985	43.529675	2
TATCACG	800	41.685707	2
TATCAAC	86225	38.93866	2
ATCAACG	87595	38.234478	3
TCAACGC	89535	37.99798	4
AACGCAG	92400	37.62639	6
CAACGCA	90565	37.613632	5
AGATTAC	2015	35.464622	2
ACGCAGA	100545	34.566498	7
CGCAGAG	101820	34.226517	8
GCAGAGT	105145	33.240356	9
AAACGCA	1715	32.95443	5
CATGGGG	16755	31.84584	4
ACAACGC	1380	31.501621	3
GTATAAC	1665	30.666449	1
CATGGGT	7115	30.466013	4
TCACGCA	1175	30.409025	4