SRR3559490.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559490.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10802561
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	209960	1.9436131857991823	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97849	0.9057944685524109	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	64720	0.599117190821695	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33368	0.3088897160589975	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27146	0.2512922630105953	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19956	0.18473397187944599	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	16390	0.1517232811737883	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15630	0.14468791243113555	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15330	0.1419107931906147	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	13385	0.12390580344790462	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	88875	56.73789	1
TATCAAC	113015	44.540173	2
ATCAACG	113875	44.04169	3
TCAACGC	115540	43.83996	4
CAACGCA	117125	43.377552	5
AACGCAG	120455	42.692017	6
ACGCAGA	131750	39.036522	7
CGCAGAG	133905	38.496788	8
GCAGAGT	139720	36.915886	9
CGCATAG	1865	34.48637	1
GGTATCA	46595	31.82529	1
TACAACG	2220	31.652363	2
CATGGGG	34115	30.163065	4
TATCACG	1570	29.964329	2
TAACGCA	1595	29.86802	4
AGTACTT	86290	29.33113	12-13
CATGGGT	14020	29.222511	4
ACAACGC	2375	28.583694	3
AGAGTAC	136870	28.509008	10-11
ACATGGG	85345	27.840174	3