SRR3559467.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559467.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5084573
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	114968	2.26111415845539	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57422	1.129337704464072	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	36772	0.7232072388379516	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19772	0.3888625455864239	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17066	0.33564273735473954	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11425	0.22469930119992376	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	10318	0.20292756146878016	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9215	0.18123449107722517	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7970	0.15674865913027505	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	7556	0.1486063824828555	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	5383	0.10586926375135139	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	5375	0.1057119250721742	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	870	53.908848	1
GTATCAA	50310	52.76684	1
TATCAAC	63870	41.42947	2
TATCACG	910	40.567898	2
ATCAACG	65035	40.540836	3
TCAACGC	66320	40.383797	4
CAACGCA	67080	39.980785	5
AACGCAG	68720	39.753857	6
ACGCAGA	75100	36.352863	7
CGCAGAG	76180	35.93085	8
TAACGCA	1005	35.548183	4
GCAGAGT	79380	34.519863	9
TACAACG	895	33.92965	2
CATGGGG	14750	30.558786	4
CATGGGT	7175	30.1243	4
GGTATCA	28135	30.112637	1
TCACGCA	1365	30.098766	4
ATCACGC	1365	29.662552	3
AGTACTT	50625	28.808382	12-13
AGAGTAC	78010	27.580011	10-11