SRR3559439.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559439.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1869833
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38899	2.0803462127366457	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18291	0.9782157016161336	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13834	0.7398521686161278	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6638	0.3550049656841012	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6360	0.34013732777205236	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4645	0.24841790683980872	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4472	0.23916574367871357	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3092	0.16536236123760786	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2940	0.15723329302670344	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2779	0.14862289840857446	No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC	2624	0.14033338806192852	No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT	2407	0.12872807357662422	No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG	2335	0.1248774623188274	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2182	0.11669491339600915	No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA	2077	0.11107943864505547	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	2058	0.11006330511869242	No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG	2011	0.10754971165874172	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	545	64.70901	1
TATCACG	370	58.12994	2
TACAACG	370	46.826897	2
TAACGCA	410	43.715607	4
TAGTACT	855	42.599663	5
ATAGTAC	840	41.96351	4
GTATCAA	25160	41.337845	1
TCACGCA	550	41.27813	4
GCATAGT	880	39.37716	2
ATCACGC	570	38.78162	3
ACAACGC	455	38.07901	3
GTATCAC	775	36.24978	1
TATCAAC	30280	34.351208	2
AGATTAC	950	33.96012	2
ATCAACG	30570	33.927616	3
TCAACGC	31245	33.86391	4
CAACGCA	31535	33.608406	5
AACGCAG	32290	33.52526	6
ACGCAGA	35040	30.825975	7
GATTACT	1070	30.709871	3