SRR3559434.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559434.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4229392
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	179994	4.255789011753936	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	85306	2.016980218433288	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	57220	1.352913137396581	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28578	0.6756999587647586	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19608	0.4636127367716211	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15178	0.35886954909831015	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12479	0.2950542300169859	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12418	0.29361194233119087	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	8530	0.20168383540707505	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	7691	0.1818464687122877	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6440	0.15226774912327823	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	5347	0.12642479108108212	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5241	0.12391852067625796	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5054	0.11949708137718142	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	4726	0.11174182955848028	No Hit
ATACAGGGTGACAGCCCCGTACACAAAAATGCACATGCTGTGAGCTCGAT	4582	0.1083370848575871	No Hit
ACTTAGATGTTTCAGTTCCCCCGGTTCGCCTCATTAACCTATGGATTCAG	4386	0.10370284901470471	No Hit
GTATCAACGCAGAGTACATGGGGGTTAAGCGACTAAGCGTACACGGTGGA	4265	0.10084191770353752	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	56200	71.03786	1
GGTATCA	22865	55.80326	1
TATCAAC	74450	53.631126	2
ATCAACG	76580	52.123833	3
TCAACGC	78000	51.358635	4
CAACGCA	78850	50.843563	5
AACGCAG	80200	50.166294	6
ACGCAGA	88630	45.33469	7
CGCAGAG	89300	45.007923	8
GACCGTT	940	43.80504	7
GCAGAGT	93120	43.135952	9
TACTGGT	3530	38.735664	2
GGACCGT	1565	37.36882	6
GTACTGG	3925	37.339317	1
CATGGGT	9600	36.510445	4
GGTTCAC	3845	34.144756	6
AGAGTAC	92785	33.17684	10-11
ACTGGTT	4050	33.172466	3
TGGTTCA	4100	32.45777	5
AGTACTT	65490	32.393505	12-13