SRR3559421.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559421.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3884372
Sequences flagged as poor quality	0
Sequence length	125
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	93198	2.3993067605265406	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	43948	1.1314055399431362	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	30393	0.7824430821764754	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15880	0.4088176930530855	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14807	0.3811941801660603	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	11007	0.28336626873018345	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9613	0.24747887174554856	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	8408	0.21645712614548762	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7118	0.1832471246317294	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6728	0.17320689161594202	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	4572	0.11770242396969188	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	42340	48.815067	1
CGCATAG	780	47.522846	1
TATCACG	505	42.60265	2
TATCAAC	52550	39.32582	2
ATCAACG	53380	38.66956	3
TCAACGC	54340	38.55829	4
CAACGCA	55000	38.18399	5
AACGCAG	55995	38.113506	6
TACAACG	675	35.41455	2
ACGCAGA	61045	34.940968	7
CGCAGAG	61930	34.480225	8
CATGGGG	11590	33.464687	4
GCAGAGT	64035	33.236507	9
TAGTACT	1205	31.724009	5
CATGGGT	5130	31.220722	4
TAACGCA	720	29.881025	4
GGACCGT	845	28.981594	6
AGTACTT	39065	28.526794	12-13
ATAGTAC	1325	28.415165	4
GGTATCA	25315	27.821001	1