SRR3559417.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559417.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2553777
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

$Per Sequence quality graph$

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	70511	2.761047656079603	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34870	1.3654285397667847	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22885	0.8961236631076244	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13361	0.523185853737425	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13348	0.5226768038086332	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8766	0.34325628275295766	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5629	0.22041861916682623	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5274	0.20651764034212852	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	4398	0.17221550667893087	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	2872	0.11246087657614584	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	2772	0.1085451078931324	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2720	0.10650890817796542	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	24205	60.103535	1
TATCACG	435	50.64352	2
CGCATAG	840	48.40527	1
TATCAAC	31035	46.811172	2
TAACGCA	540	46.309166	4
ATCAACG	31510	46.067722	3
TCAACGC	32605	45.251038	4
TACAACG	555	45.057568	2
CAACGCA	33080	44.667717	5
AACGCAG	34335	44.26461	6
ACGCAGA	37920	40.095463	7
CGCAGAG	38420	39.7439	8
GGTATCA	11810	39.036194	1
GTATAAC	770	38.827755	1
GCAGAGT	40025	37.986755	9
ATAGTAC	1100	36.806767	4
ACAACGC	665	35.81375	3
GTACAAC	820	35.0018	1
TAGTACT	1295	33.51861	5
AGATTAC	1105	31.790781	2