SRR3559396.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559396.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3757844
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	72676	1.9339812935289489	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	34361	0.9143806927589331	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24326	0.6473392721996974	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11614	0.3090601951544556	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	8201	0.21823684006041763	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	7464	0.19862453044884246	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	6538	0.1739827411675418	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5819	0.15484942961975004	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	5800	0.15434382055242313	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5682	0.15120372213428765	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	5537	0.14734512662047705	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	5509	0.14660001852125848	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	5408	0.1439123071633628	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4594	0.12225095027893654	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4010	0.10671012420952013	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3779	0.10056298239096674	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	38295	50.668163	1
TAACGCA	900	42.345573	4
TATCAAC	47640	40.773945	2
ATCAACG	48190	40.17266	3
CAACGCA	50030	39.658566	5
AACGCAG	51835	39.44811	6
TCAACGC	50075	39.445282	4
TATCACG	675	37.93458	2
CATGGGT	5340	37.803238	4
GTATAAC	1195	37.52804	1
TCACGCA	750	37.31704	4
ACGCAGA	56405	36.05169	7
CGCAGAG	56745	35.961895	8
GCAGAGT	58775	34.547844	9
TACAACG	650	33.89682	2
CGCATAG	1190	33.665913	1
GGACCGT	1385	33.485897	6
TACTGGT	3065	33.222797	2
TCTAACG	565	32.67261	2
GTACTGG	3425	32.647026	1