SRR3559374.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559374.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2736489
Sequences flagged as poor quality	0
Sequence length	125
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95189	3.4785084098638808	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	48097	1.757617151028197	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31571	1.153704619313288	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18081	0.6607371708784505	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16782	0.6132675848505147	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10790	0.3943008723952481	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7499	0.27403727915588183	No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7045	0.25744667711070646	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	6686	0.24432767681507217	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	4791	0.17507835770580477	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	4723	0.17259342171665956	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	4473	0.1634576276389198	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3654	0.13352876624024435	No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG	3279	0.11982507512363472	No Hit
ATCATTAACTGAATCCATAGGTTAATGAGGCGAACCGGGGGAACTGAAAC	3213	0.1174132254871114	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	3135	0.1145628577348566	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	3121	0.11405125326650317	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	895	56.058483	1
GTATCAA	36640	55.11563	1
TAACGCA	755	53.62742	4
TACAACG	645	53.54281	2
GTATAAC	935	45.994507	1
GACCGTT	575	44.491417	7
TATCAAC	46355	43.30071	2
AGATTAC	1490	43.158897	2
ATCAACG	47445	42.305145	3
ATAGTAC	1220	41.972378	4
TCAACGC	49075	41.73717	4
CAACGCA	49640	41.33682	5
ACAACGC	865	41.300953	3
AACGCAG	51185	41.158432	6
GGTTTCA	1415	40.944954	1
GTACAAC	965	40.231953	1
TATCACG	560	38.277832	2
ATAACGC	1215	38.22463	3
GTACTGG	2200	38.00935	1
ACGCAGA	55965	37.64307	7