SRR3559359.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3559359.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1273932
Sequences flagged as poor quality	0
Sequence length	125
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23289	1.828119554261923	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10925	0.8575810953802872	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8420	0.6609457961649444	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3695	0.29004687848330996	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2181	0.17120223057431638	No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA	2101	0.16492246053949505	No Hit
GTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGT	1789	0.1404313574036919	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1769	0.13886141489498655	No Hit
GTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC	1588	0.12465343519120331	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1569	0.12316198980793322	No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT	1427	0.1120153979961254	No Hit
GGTTTCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1363	0.10699158196826832	No Hit
GTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATA	1355	0.1063636049647862	No Hit
GGATACCACGTGTCCCGCCCTACTCATCGAGCTCACAGCATGTGCATTTT	1322	0.1037731998254224	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGCA	350	0.0	52.733486	4
GTATCAA	11940	0.0	51.903748	1
TATCACG	195	0.0	45.798313	2
CGCATAG	395	0.0	45.345043	1
AGATTAC	730	0.0	42.41049	2
GTATAAC	470	0.0	41.920044	1
TATCAAC	15185	0.0	40.698215	2
ATCAACG	15300	0.0	40.31449	3
TCAACGC	15730	0.0	40.196533	4
AACGCAG	16530	0.0	40.058178	6
CAACGCA	15880	0.0	40.01194	5
ATAACGC	530	0.0	37.07071	3
ACGCAGA	18060	0.0	36.46689	7
GATTACT	835	0.0	36.364407	3
CGCAGAG	18330	0.0	36.18939	8
GCAGAGT	18955	0.0	35.027508	9
ATAGTAC	510	0.0	35.022236	4
TCACGCA	275	0.0	34.64018	4
GACCGTT	190	2.910383E-11	34.44355	7
ACAACGC	325	0.0	32.974785	3